Zulkifli, M.Y. & M. Mukhlis, M.Y. (2017). Tadabbur Surah Al-Anfal: Cetakan Kedua, CQR, Kuala Lumpur.
2016
Zulkifli Mohd Yusoff & Muhammad Mukhlis, Tafsir Al-Quran Al-Hakim, Juzuk 30, CQR, 2016 (ISBN: 978-967-0882-05-5)
Zulkifli Mohd Yusoff, Adama Bamba & Ahmad Kasim Kasar, Al-Quran al-Karim, wasa?an li talaquh al-ulum wa al-ma’arif wal ?a?arat, CQR, 2016 (ISBN: 978-967-0882-07-9)
Mohd Yakub @ Zulkifli Mohd Yusoff & Muhamad Alihanafiah Norasid, Qur anic Research Interaction of Knowledge, Science and Civilization, CQR, 2016 (ISBN: 978-967-0882-07-9)
Zulkifli Haji Mohd Yusoff dan Mukhlis Muhammad Yunus (2016). Kajian al-Quran: Cetakan Kedua, CQR, Kuala Lumpur.
Zulkifli, M.Y. & A. K. Kasar (2016). Kaifa takunu bahisan fi al-I’jazi ‘ilmi lil qur’anil karim?. CQR, Kuala Lumpur.
Zulkifli, M.Y. & M. Mukhlis, M.Y. (2016). Tadabbur Surah Al-Anfal: Cetakan Pertama, CQR, Kuala Lumpur.
Mohd Yakub Zulkifli Haji Mohd Yusoff, Nordin Ahmad, Ahmad Yussuf, Muhamad Alihanafiah Norasid, Selamat Amir, Adama Bamba, Mohd Zainuddin Wan Yusoff, Sukhairu Sulaiman, Shahrulkarnain Mohd Nazir. (2016). Memperkasa Generasi Al-Quran, Darul Quran JAKIM & Centre of Quranic Research (CQR) University of Malaya
Abdullatif Ahmadi Ramchahi & M.Y. Zulkifli bin Haji Mohd Yusoff. (2016). "Ibn Khaldun's Inductive Method and its Contribution to the Discovery of the Science of Civilisation and Development of Sociology". Malaysia: Centre of Quranic Research University of Malaya, ISBN: 978-967-0882-09-3
Mohd Yakub@Zulkifli Mohd Yusoff, Khadher Ahmad & Monika@Munirah Abd Razzak (ed.), 2016. Penyelidikan Tentang Makanan: Perspektif Nabawi dan Saintifik, Kuala Lumpur: Jabatan al-Quran dan al-Hadith, APIUM. [ISBN: 978-967-5534-52-2]
Mustaffa Abdullah. 2016. Usul Tafsir: Kuala Lumpur: Jabatan al-Quran dan al-Hadith, Universiti Malaya.
